Publications (microscopy)
See also: all LOB publications
2020 • 2019 • 2018 • 2017 • 2016 • 2015 • 2014 • 2013 • 2012 • 2011 • 2010 and before • Research highlights
2023
Label-free imaging of red blood cells and oxygenation with color third-order sum-frequency generation microscopy. J. Ferrer Ortas, P. Mahou, S. Escot, C. Stringari, N. B. David, L. Bally-Cuif, N. Dray, M. Négrerie, W. Supatto, E. Beaurepaire. Light: Science & Applications (2023).
2022
Intravital deep-tumor single-beam 3-photon, 4-photon, and harmonic microscopy. G.-J. Bakker, S. Weischer, J. Ferrer Ortas, J. Heidelin, V. Andresen, M. Beutler, E. Beaurepaire, P. Friedl. eLife (2022).
nAdder: A scale-space approach for the 3D analysis of neuronal traces. M.-S. Phan, K. Matho, E. Beaurepaire, J. Livet, A. Chessel. PLOS Comp Biol (2022).
Guidance by followers ensures long-range coordination of cell migration through α-catenin mechanoperception.
Coordinated metabolic transitions and gene expression by NAD+ during adipogenesis. E Sánchez-Ramírez, TPL Ung, A Alarcón del Carmen, X del Toro-Ríos, GR Fajardo-Orduña, LG Noriega, VA Cortés-Morales, AR Tovar, JJ Montesinos, R Orozco-Solís, C Stringari, L Aguilar-Arnal. J Cell Biol (2022).
Live 3D imaging and mapping of shear stresses within tissues using incompressible elastic beads.
High-throughput tuning of ovarian cancer spheroids for on-chip invasion assays
C Chen, Y He, E Lopez, F Carreiras, A Yamada, MC Schanne-Klein, A Lambert, Y Chen, C Aimé Micro and Nano Engineering
Electric field measurements in plasmas: how focusing strongly distorts the E-FISH signal.TL Chng, S Starikovskaia, MC Schanne-Klein. Plasma Sources Sci Techn
Three-Dimensional Collagen Topology Shapes Cell Morphology, beyond Stiffness.
C Chen, Z Ibrahim, MF Marchand, T Piolot, S Kamboj, F Carreiras, A Yamada, MC Schanne-Klein, Y Chen, A Lambert, C Aimé. ACS Biomat Sci Eng
2021
Noninvasive quantitative assessment of collagen degradation in parchments by polarization-resolved SHG microscopy
M Schmeltz, L Robinet, S Heu-Thao, JM Sintès, C Teulon, G Ducourthial, P Mahou, MC Schanne-Klein, G Latour
Science Advances (2021)
Modeling nonlinear microscopy near index-mismatched interfaces
J Morizet, G Sartorello, N Dray, C Stringari, E Beaurepaire, N Olivier
Optica (2021)
Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain
N Dray, L Mancini, U Binshtok, F Cheysson, W Supatto, P Mahou, S Bedu, S Ortica, E Than-Trong, M Krecsmarik, S Herbert, JB Masson, JY Tinevez, G Lang, E Beaurepaire, D Sprinzak, L Bally-Cuif
Cell Stem Cell (2021)
Deep and Spatially Controlled Volume Ablations using a Two-Photon Microscope in the Zebrafish Gastrula
A Boutillon, S Escot, D David
JoVE (2021)
GeNePy3D: a quantitative geometry python toolbox for bioimaging
MS Phan, A Chessel
F1000 research (2021)
Quantitative structural imaging of keratoconic corneas using polarization-resolved SHG microscopy
C Raoux, M Schmeltz, M Bied, M Alnawaiseh, U Hansen, G Latour, MC Schanne-Klein
Biomedical optics express (2021)
Simultaneous NAD(P)H and FAD fluorescence lifetime microscopy of long UVA–induced metabolic stress in reconstructed human skin
T.P.L. Ung, S. Lim, X. Solinas, P. Mahou, A. Chessel, C. Marionnet, T. Bornschlögl, E. Beaurepaire, F. Bernerd, A.-M. Pena, C. Stringari
Scientific Reports 11, 22171 (2021)
Mueller polarimetric imaging for fast macroscopic mapping of microscopic collagen matrix remodeling by smooth muscle cells
O Chashchina, H Mezouar, J Vizet, C Raoux, J Park, C Ramón-Lozano, MC Schanne-Klein, A Barakat, A Pierangelo
Scientific Reports (2021)
Rapid Evaluation of Novel Therapeutic Strategies Using a 3D Collagen-Based Tissue-Like Model
P Maury, E Porcel, A Mau, F Lux, O Tillement, P Mahou, MC Schanne-Klein, Sandrine Lacombe
Frontiers in Bioengineering and Biotechnology (2021)
Core–Shell Pure Collagen Threads Extruded from Highly Concentrated Solutions Promote Colonization and Differentiation of C3H10T1/2 Cells
L Picaut, L Trichet, C Hélary, G Ducourthial, MA Bonnin, B Haye, O Ronsin, MC Schanne-Klein, D Duprez, T Baumberger, G Mosser
ACS Biomaterials Science and Engineering (2021)
2020
Circular dichroism second-harmonic generation microscopy probes the polarity distribution of collagen fibrils
M Schmeltz, C Teulon, M Pinsard, U Hansen, M Alnawaiseh, D Ghoubay, V Borderie, G Mosser, C Aimé, F Légaré, G Latour, MC Schanne-Klein
Optica (2020)
Fast in vivo multiphoton light-sheet microscopy with optimal pulse frequency
V Maioli, A Boniface, P Mahou, J Ferrer Ortas, L Abdeladim, E Beaurepaire, W Supatto
Biomedical optics express (2020)
Fast In Vivo Imaging of SHG Nanoprobes with Multiphoton Light-Sheet Microscopy
G Malkinson, P Mahou, E Chaudan, T Gacoin, A Sonay, P Pantazis, E Beaurepaire, W Supatto
ACS photonics (2020)
Development, structure, and bioengineering of the human corneal stroma: A review of collagen-based implants
A Tidu, MC Schanne-Klein, V Borderie
Experimental Eye Research (2020)
Dynamics of Cell Membrane Permeabilization by Saponins Using Terahertz Attenuated Total Reflection
Zheng, G Gallot
Biophysical Journal (2020)
Monitoring the molecular composition of live cells exposed to electric pulses via label-free optical methods
A Azan, M Grognot, T García Sánchez, L Descamps, V Untereiner, O Piot, G Gallot, L Mir
Scientific Reports (2020)
Corneal stromal stem cells restore transparency after N 2 injury in mice
D Ghoubay, M Borderie, K Grieve, R Martos, R Bocheux, TM Nguyen, P Callard, A Chédotal, V Borderie
Stem Cells Translational Medicine (2020)
Native Collagen: Electrospinning of Pure, Cross-Linker-Free, Self-Supported Membrane
D Dems, J Rodrigues da Silva, C Hélary, F Wien, M Marchand, N Debons, L Muller, Y Chen, MC Schanne-Klein, C Laberty-Robert, N Krins, C Aimé
ACS Applied Bio Materials (2020)
Terahertz sensing in biology and medicine
Guilhem Gallot
Photoniques (2020)
Differentiation of neural-type cells on multi-scale ordered collagen-silica bionanocomposites
N Debons, D Dems, C Hélary, S Le Grill, L Picaut, F Renaud, N Delsuc, MC Schanne-Klein, T Coradin, C Aimé
Biomaterials Science (2020)
2019
Cortical astrocytes develop in a plastic manner at both clonal and cellular levels
S. Clavreul, L. Abdeladim, E. Hernández-Garzón, D.Niculescu, J. Durand, S.-H. Ieng, R. Barry, G. Bonvento, E. Beaurepaire, J. Livet, K. Loulier
Nature Communications 10, 4884 (2019)
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy
L. Abdeladim, K.S. Matho, S. Clavreul, P. Mahou, J.-M. Sintes, X. Solinas, I. Arganda-Carreras, S.G. Turney, J.W. Lichtman, A. Chessel, A.-P. Bemelmans, K. Loulier, W. Supatto, J. Livet, E. Beaurepaire
Nature Communications 10, 1662 (2019)
High-speed polarization-resolved third-harmonic microscopy
J. Morizet, G. Ducourthial, W. Supatto, A. Boutillon, R. Legouis, M.-C. Schanne-Klein, C. Stringari, E. Beaurepaire
Optica 6 (3), 385-388 (2019).
Monitoring dynamic collagen reorganization during skin stretching with fast polarization‐resolved second harmonic generation imaging
G. Ducourthial, J.-S. Affagard, M. Schmeltz, X. Solinas, M. Lopez‐Poncelas, C. Bonod‐Bidaud, R. Rubio‐Amador, F. Ruggiero, J.‐M. Allain, E. Beaurepaire, M.‐C. Schanne‐Klein
J. Biophotonics e201800336 (2019).
Third harmonic generation imaging and analysis of the effect of low gravity on the lacuno-canalicular network of mouse bone
R. Genthial, M. Gerbaix, D. Farlay, L. Vico, E. Beaurepaire, D. Débarre, A. Gourrier
PLoS ONE 14(1): e0209079 (2019).
2018
Chiral cilia organization in the left-right organizer, R.R. Ferreira, G. Pakula, L. Klaeyle, H. Fukui, A. Vilfan, W. Supatto, J. Vermot, Cell Reports (2018).
Dual-color deep-tissue three-photon microscopy with a multiband infrared laser, K. Guesmi, L. Abdeladim, S. Tozer, P. Mahou, T. Kumamoto, K. Jurkus, P. Rigaud, K. Loulier, N. Dray, P. Georges, M. Hanna, J. Livet, W. Supatto, E. Beaurepaire, F. Druon, Light Science & Applications (2018).
Snapshots of archaeal DNA replication and repair in live cells using super-resolution imaging, F. Delpech, Y. Collien, P. Mahou, E. Beaurepaire, H. Myllykallio, R. Lestini, Nucleic Acids Research (2018)..
Highly concentrated collagen solutions leading to transparent scaffolds of controlled three-dimensional organizations for corneal epithelial cell colonization, A. Tidu, D. Ghoubay-Benallaoua, C. Teulon, S. Asnacios, K. Grieve, F. Portier, M.-C. Schanne-Klein, V. Borderie, G. Mosser, Biomaterials Science (2018).
2017
Physical limits of flow sensing in the left-right organizer, R.R. Ferreira, A. Vilfan, F. Jülicher, W. Supatto, J. Vermot, eLife 6:e25078 (2017).
Metrology of multiphoton microscopes using second harmonic generation nanoprobes, P. Mahou, G. Malkinson, E. Chaudan, T. Gacoin, E. Beaurepaire, W. Supatto, Small 13, 1701442 (2017).
Multicolor two-photon imaging of endogenous fluorophores in living tissues by wavelength mixing, C. Stringari, L. Abdeladim, G. Malkinson, P. Mahou, X. Solinas, I. Lamarre, S. Brizion, J.-B. Galey, W. Supatto, R. Legouis, A.-M. Pena, E. Beaurepaire, Scientific Reports 7, 3792 (2017).
Image Data Resource: a bioimage data integration and publication platform, Williams et al, Nature Methods (2017).
An overview of data science uses in bioimage informatics, A. Chessel, Methods 115, 118 (2017).
How aging impacts skin biomechanics: a multiscale study in mice, B. Lynch, C. Bonod-Bidaud, G. Ducourthial, J.-S. Affagard, S. Bancelin, S. Psilodimitrakopoulos, F. Ruggiero, J.-M. Allain, and M.-C. Schanne-Klein, Scientific Reports 7, 13750 (2017).
Easy xeno-free and feeder-free method for isolating and growing limbal stromal and epithelial stem cells of the human cornea, D. Ghoubay-Benallaoua, C. de Sousa, R. Martos, G. Latour, M.-C. Schanne-Klein, E. Dupin, V. Borderie, Plos One 12 (11), e0188398 (2017).
Stromal striae: a new insight into corneal physiology and mechanics, K. Grieve, D. Ghoubay, C. Georgeon, G. Latour, A. Nahas, K. Plamann, C. Crotti, R. Bocheux, M. Borderie, T.-M. Nguyen, F. Andreiuolo, M.-C. Schanne-Klein, and V. Borderie, Scientific Reports 7, 13584 (2017).
Stabilization of collagen fibrils by gelatin addition: a study of collagen/gelatin dense phases, F. Portier, C. Teulon, A. Nowacka-Perrin, F. Guenneau, M.-C. Schanne-Klein, and G. Mosser, Langmuir 33 (45), 12916–12925 (2017).
A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization, B. Lynch, S. Bancelin, C. Bonod-Bidaud, J.-B. Guesquin, F. Ruggiero, M.-C. Schanne-Klein, and J.-M. Allain, Acta Biomateriala 50, 302-311 (2017).
Cell Viability and Shock Wave Amplitudes in the Endothelium of Porcine Cornea exposed to Ultrashort Laser Pulses, S. A. Hussain, C. Milián, C. Crotti, L. Kowalczuk, F. Alahyane, Z. Essaïdi, A. Couairon, M.-C. Schanne-Klein, and K. Plamann, Graefes Arch. Clin. Exp. Ophthalmol. 255, 945-953 (2017). doi:10.1007/s00417-017-3583-3
Affine kinematics in planar fibrous connective tissues: an experimental investigation, C. Jayyosi, J.-S. Affagard, G. Ducourthial, C. Bonod-Bidaud, B. Lynch, S. Bancelin, F. Ruggiero, M.-C. Schanne-Klein, J.-M. Allain, K. Bruyère-Garnier, and M. Coret, Biomechanics and Modeling in Mechanobiology 16 (4), 1459-1473 (2017).
Label-free imaging of bone multiscale porosity and interfaces using third-harmonic generation microscopy, R. Genthial, E. Beaurepaire, M.-C. Schanne-Klein, F. Peyrin, D. Farlay, C. Olivier, Y. Bala, G. Boivin, J.-C. Vial, D. Débarre, A. Gourrier, Scientific Reports 7, 3419 (2017).
Life-long neurogenic activity of individual neural stem cells and continuous growth establish an outside-in architecture in the teleost pallium, G. Furlan, V. Cuccioli, N. Vuillemin, L. Dirian, A. Janue Muntasell, M. Coolen, N. Dray, S. Bedu, C. Houart, E. Beaurepaire, I. Foucher, L. Bally-Cuif, Current Biology 27, 3288-3301 (2017).
All-fiber femtosecond laser providing 9 nJ, 50 MHz pulses at 1650 nm for three-photon microscopy, P. Cadroas, L. Abdeladim, L. Kotov, M. Likhachev, D. Lipatov, D. Gaponov, A. Hideur, M. Tang, J. Livet, W. Supatto, E. Beaurepaire, S. Février, J. Optics 19, 065506 (2017).
2016
Efficient second-harmonic imaging of collagen in histological slides using Bessel beam excitation, N. Vuillemin, P. Mahou, D. Débarre, T. Gacoin, P.-L. Tharaux, M.-C. Schanne-Klein, W.Supatto, E. Beaurepaire, Scientific Reports 6, 29863 (2016). Erratum: 6, 31258 (2016).
Correlative nonlinear optical microscopy and infrared nanoscopy reveals collagen degradation in altered parchments, G. Latour, L. Robinet, A. Dazzi, F. Portier, A. Deniset-Besseau, and M.-C. Schanne-Klein, Sci. Rep. 6, 26344 (2016).
Probing the 3D structure of cornea-like collagen liquid crystals with polarization-resolved SHG microscopy, C. Teulon, A. Tidu, F. Portier, G. Mosser, and M.-C. Schanne-Klein, Opt. Express 24, 16084 (2016).
Simultaneous microstructural and mechanical characterization of human corneas at increasing pressure, A. Benoit, G. Latour, M.-C. Schanne-Klein, and J.-M. Allain, J. Mech. Behav. Biomed. Mater. 60, 93-105 (2016)
2015
"Whole-brain functional imaging with two-photon light-sheet microscopy", S. Wolf, W. Supatto, G. Debrégeas, P. Mahou, S.G. Kruglik, J.-M. Sintes, E. Beaurepaire & R. Candelier, Nature Methods 12(5), 379–380 (2015). doi:10.1038/nmeth.3371.
Ex vivo multiscale quantitation of skin biomechanics in wild-type and genetically-modified mice using multiphoton microscopy, S. Bancelin, B. Lynch, C. Bonod-Bidaud, G. Ducourthial, S. Psilodimitrakopoulos, P. Dokladal, J.-M. Allain, M.-C. Schanne-Klein, and F. Ruggiero, Scientific Reports 5, 17635 (2015)
Optimization of Picrosirius Red Staining Protocol to Determine Collagen Fiber Orientations in Vaginal and Uterine Cervical Tissues by Mueller Polarized Microscopy, A. Nazac, S. Bancelin, B. Teig, B. H. Ibrahim, H. Fernandez, M.-C. Schanne-Klein, A. De Martino, Microsc. Res. Tech. 78, 723-730 (2015)
Theoretical, numerical and experimental study of geometrical parameters that affect anisotropy measurements in polarization-resolved SHG microscopy, C. Teulon, I. Gusachenko, G. Latour, and M.-C. Schanne-Klein, Opt. Express 23, 9313-9328 (2015).
Large-scale live imaging of adult neural stem cells in their endogenous niche, N. Dray, S. Bedu, N. Vuillemin, A. Alunni, M. Coolen, M. Krecsmarik, W. Supatto, E. Beaurepaire, and L. Bally-Cuif, Development 142: 3592-3600 (2015). doi: 10.1242/dev.123018.
In vivo single-cell detection of metabolic oscillations in stem cells, C. Stringari, H. Wang, M. Geyfman, V. Crosignani, V. Kumar, J.S. Takahashi, B. Andersen, E. Gratton, Cell Reports 10(1), 1-7 (2015). doi:10.1016/j.celrep.2014.12.007.
2014
Multicolor two-photon light-sheet microscopy, P. Mahou, J. Vermot, E. Beaurepaire, W. Supatto, Nature Methods 11(6), 600-601 (2014).
Determination of collagen fibril size via absolute measurements of second-harmonic generation signals, S. Bancelin, C. Aimé, I. Gusachenko, L. Kowalczuk, G. Latour, T. Coradin, M.-C. Schanne-Klein, Nat. Commun. 5, art. 4920 (2014)
Fibrillogenesis from nanosurfaces: multiphoton imaging and stereological analysis of collagen 3D self-assembly dynamics, S. Bancelin, E. Decencière, V. Machairas, C. Albert, T. Coradin, M.-C. Schanne-Klein, C. Aimé, Soft Matter 10, 6651 (2014)
Determination of collagen fiber orientation in histological slides using Mueller microscopy and validation by second harmonic generation imaging, S. Bancelin, A. Nazac, B. H. Ibrahim, P. Dokladal, E. Decencière, B. Teig, H. Haddad, H. Fernandez, M.-C. Schanne-Klein, A. de Martino, Opt. Express 22, 22561 (2014)
Mitigating phototoxicity during multiphoton microscopy of live Drosophila embryos in the 1.0–1.2 µm wavelength range, D. Débarre, N. Olivier, W. Supatto, E. Beaurepaire, PLoS ONE 9(8): e104250 (2014). doi:10.1371/journal.pone.0104250.
Multiplex cell and lineage tracking with combinatorial labels, K. Loulier, R. Barry, P. Mahou, Y. Le Franc, W. Supatto, K.S. Matho, S. Ieng, S. Fouquet, E. Dupin, R. Benosman, A. Chédotal, E. Beaurepaire, X. Morin, J. Livet, Neuron 81(3), 505-520 (2014).
Advances in whole-embryo imaging: a quantitative transition is underway, P. Pantazis & W. Supatto, Nature Reviews Molecular Cell Biology 15, 327-339 (2014).
2013
Probing ordered lipid assemblies with polarized third-harmonic-generation microscopy, M. Zimmerley, P. Mahou, D. Débarre, M.-C. Schanne-Klein & E. Beaurepaire, Phys. Rev. X 3, 011002 (2013).
Non-invasive monitoring of cell metabolism and lipid production in 3D engineered human adipose tissues using label-free multiphoton microscopy, T. Chang, M. Zimmerley, K.P. Quinn, I. Lamarre-Jouenne, D.L. Kaplan, E. Beaurepaire & I. Georgakoudi, Biomaterials 34(34) 8607-16 (2013).
Achievement of cornea-like organizations in dense collagen I solutions: clues to the physico-chemistry of cornea morphogenesis, P. De Sa Peixoto, A. Deniset-Besseau, M. Schmutz, A. Anglo, C. Illoul, M.-C. Schanne-Klein, G. Mosser, Soft Matter 9, 11241 (2013)
Intracellular dynamics of archaeal FANCM homologue Hef in response to halted DNA replication, R. Lestini, S. P. Laptenok, J. Kühn, M. A. Hink, M.-C. Schanne-Klein, U. Liebl, H. Myllykallio, Nucleic Acid Res. 22, 10358 (2013)
Numerical simulation of polarization-resolved second harmonic microscopy in birefringent media I. Gusachenko and M.-C. Schanne-Klein, Phys. Rev. A 88, 053811 (2013)
A Bottom-Up Approach to Build the Hyperpolarizability of Peptides and Proteins from their Amino-Acids, J. Duboisset, A. Deniset-Besseau, E. Benichou, I. Russier-Antoine, N. Lascoux, C. Jonin, F. Hache, M.-C. Schanne-Klein, P.-F. Brevet, J. Phys. Chem. B 117, 9877 (2013)
Multimodal Highlighting of Structural Abnormalities in Diabetic Rat and Human Corneas, L. Kowalczuk, G. Latour, J.-L. Bourges, M. Savoldelli, J.-C. Jeanny, K. Plamann, M.-C. Schanne-Klein, F. Behar-Cohen, Trans. Vis. Sci. Tech. 2, 3 (2013)
THG microscopy of cells and tissues: contrast mechanisms and applications, N. Olivier, D. Débarre & E. Beaurepaire, in Series in Cellular and Clinical Imaging, SHG Imaging pp. 51-80, CRC Press 2013.
2012
Multicolor two-photon tissue imaging by wavelength mixing, P. Mahou, M. Zimmerley, K. Loulier, K. Matho, G. Labroille, X. Morin, W. Supatto, J. Livet, D. Débarre & E. Beaurepaire, Nature Methods 9(8) 815-818 (2012).
Hyperglycemia-Induced Abnormalities in Rat and Human Corneas: The Potential of Second Harmonic Generation Microscopy, G. Latour, L. Kowalczuk, M. Savoldelli, J.-L. Bourges, K. Plamann, F. Behar-Cohen, M.-C. Schanne-Klein, PLoS ONE 7, e48388 (2012)
In situ 3D characterization of historical coatings and wood using multimodal nonlinear optical microscopy, G. Latour, J.-P. Echard, M. Didier, M.-C. Schanne-Klein, Opt. Express 20, 24623 (2012)
3D resolved mapping of optical aberrations in thick tissues, J. Zeng, P. Mahou, M.-C. Schanne-Klein, E. Beaurepaire, D. Débarre, Biomed. Opt. Express 3, 1898 (2012)
Imaging and 3D Morphological Analysis of Collagen Fibrils, H. Altendorf, E. Decencière, D. Jeulin, P. D. S. Peixoto, A. Deniset-Besseau, E. Angelini, G. Mosser, M.-C. Schanne-Klein, J. Microscopy 247, 161 (2012).
In situ three-dimensional monitoring of collagen fibrillogenesis using SHG microscopy, S. Bancelin, C. Aimé, T. Coradin, M.-C. Schanne-Klein, Biomed. Opt. Express 3, 1446 (2012).
Polarization-resolved second-harmonic microscopy in tendon upon mechanical stretching, I. Gusachenko, Y. G. Houssen, V. Tran, J.-M. Allain, M.-C. Schanne-Klein, Biophys. J. 102, 2220 (2012).
In vivo structural imaging of the cornea by polarization-resolved Second Harmonic microscopy, G. Latour, I. Gusachenko, L. Kowalczuk, I. Lamarre, M.-C. Schanne-Klein, Biomed. Opt. Express 3, 1 (2012).
3D resolved mapping of optical aberrations in thick samples, J. Zeng, P. Mahou, M.-C. Schanne-Klein, E. Beaurepaire, and D. Débarre, Biomed. Opt. Express 3(8), 1898-1913 (2012).
Third-harmonic generation microscopy with Bessel beams: a numerical study, N. Olivier, D. Débarre, P. Mahou, and E. Beaurepaire, Opt. Express 20(22), 24886-24902 (2012).
Accuracy of correction in modal sensorless adaptive optics, A. Facomprez, E. Beaurepaire, and D. Débarre, Opt. Express 20(3), 2837-2849 (2012).
Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy,
M. Luengo-Oroz, J. Rubio-Guivernau, E. Faure, T. Savy, L. Duloquin, N. Olivier, D. Pastor, M. Ledesma-Carbayo, D. Débarre, P. Bourgine, E. Beaurepaire, N. Peyriéras, A. Santos, IEEE Trans. Image Processing 21(4), 2335-40 (2012).
2011
"Deep and fast live imaging with two-photon scanned light-sheet microscopy"
T.V. Truong*, W. Supatto*, D.S. Koos, J.M. Choi, and S.E. Fraser
Nature Methods, 8, 757-760 (2011).
"Combined third-harmonic generation and four-wave mixing microscopy of tissues and embryos"
P. Mahou, N. Olivier, G. Labroille, L. Duloquin, J-M. Sintes, N. Peyriéras, R. Legouis, D. Débarre, and E. Beaurepaire
Biomed. Opt. Express 2(10), 2837-2849 (2011).
"Simple characterisation of a deformable mirror inside a high numerical aperture microscope using phase diversity"
D. Débarre, T. Vieille and E. Beaurepaire
J. Microsc. 244 (2), 136-143 (2011). PDF
"Advances in multiphoton microscopy for imaging embryos"
W. Supatto, T.V. Truong, D. Debarre, and E. Beaurepaire
Current Opinion in Genetics & Development 21(5) 538-548(2011).
"Toward high-content/high-throughput imaging and analysis of embryonic morphogenesis"
T.V. Truong, and W. Supatto
Genesis 49, 555-569 (2011).
"From cilia hydrodynamics to zebrafish embryonic development"
W. Supatto, and J. Vermot
Current Topics in Developmental Biology 95, 33-66 (2011).
Quantitative assessment of collagen I liquid crystal organizations: role of ionic force and acidic solvent, and evidence of new phases, P. De Sa Peixoto, A. Deniset-Besseau, M.-C. Schanne-Klein, G. Mosser, Soft Matter 7, 11203 (2011).
Monitoring micrometer-scale collagen organization in rat-tail tendon upon mechanical strain using second harmonic generation microscopy, Y. Goulam Houssen, I. Gusachenko, M.-C. Schanne-Klein, J.-M. Allain, J. Biomech. 44, 2047 (2011)
2010
"Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy"
N. Olivier, M. Luengo-Oroz, L. Duloquin, E. Faure, T. Savy, I. Veilleux, X. Solinas, D. Débarre, P. Bourgine, A. Santos, N. Peyriéras & E. Beaurepaire
Science 339(5994), 967-71 (2010). PDF.
"Multimodal nonlinear imaging of the human cornea"
F. Aptel, N. Olivier, A. Deniset-Besseau, J.-M. Legeais, K. Plamann, M.-C. Schanne-Klein & E. Beaurepaire
Invest. Ophtalmol. Vis. Sci. 51(5), 2459-65 (2010).
"Harmonic microscopy of isotropic and anisotropic microstructure of the human cornea"
N. Olivier, F. Aptel, K. Plamann, M.-C. Schanne-Klein & E. Beaurepaire
Opt. Express 18(5), 5028-40 (2010).
Multiphoton microscopy of engineered dermal substitutes: assessment of 3D collagen matrix remodeling induced by fibroblasts contraction, A.-M. Pena, D. Fagot, C. Olive, J.-F. Michelet, J.-B. Galey, F. Leroy, E. Beaurepaire, J.-L. Martin, A. Colonna, M.-C. Schanne-Klein, J. Biomed. Opt. 15, 056018 (2010)
Polarization-resolved Second Harmonic microscopy in thick anisotropic tissues, I. Gusachenko, G. Latour, M.-C. Schanne-Klein, Opt. Express 18, 19339 (2010)
Multimodal nonlinear imaging of the human cornea, F. Aptel, N. Olivier, A. Deniset-Besseau, J.-M. Legeais, K. Plamann, M.-C. Schanne-Klein, E. Beaurepaire, Invest. Ophthalmol. Vis. Sci 51, 2459 (2010)
Nonlinear optical imaging of lyotropic cholesteric liquid crystals A. Deniset-Besseau et al, Opt. Express 18, 1113 (2010)
2009 and before
"Dynamic aberration correction for multiharmonic microscopy"
N. Olivier, D. Débarre & E. Beaurepaire
Opt. Lett. 34(20), 3145-7 (2009). PDF.
"Image-based adaptive optics for two-photon microscopy"
D. Débarre, E. Botcherby, T. Watanabe, S. Srinivas, M. Booth & T. Wilson
Opt. Lett. 34(16), 2495-7 (2009). PDF.
"Two-photon microscopy with simultaneous standard and extended depth of field using an acoustic gradient-index lens"
N. Olivier, A. Mermillod-Blondin, C.B. Arnold & E. Beaurepaire
Opt. Lett. 34(11), 1684-6 (2009). PDF.
Measurement of the Second-Order Hyperpolarizability of the Collagen Triple helix and Determination of its Physical origin A. Deniset-Besseau et al, J. Phys. Chem. B 113, 13437 (2009)
"Third-harmonic generation microscopy with focus-engineered beams: a numerical study"
N. Olivier & E. Beaurepaire
Opt. Express 16(19), 14703-14715 (2008). PDF.
"Tissue deformation modulates Twist expression to determine anterior midgut differentiation in Drosophila embryos"
N. Desprat, W. Supatto, P.-A. Pouille, E. Beaurepaire & E. Farge
Dev. Cell 15(3) 470-477 (2008). PDF.
"Signal epidetection in third-harmonic generation microscopy of turbid media"
D. Débarre, N. Olivier & E. Beaurepaire
Opt. Express 15(14), 8913-8924 (2007). PDF.
"Quantitative characterization of biological liquids for third-harmonic generation microscopy"
D. Débarre & E. Beaurepaire
Biophys. J. 92(2), 603-612 (2007). PDF.
"Imaging lipid bodies in cells and tissues using third-harmonic generation microscopy "
D. Débarre, W. Supatto, A.-M. Pena, A. Fabre, T. Tordjmann, L. Combettes, M.-C. Schanne-Klein & E. Beaurepaire
Nature Methods 3(1), 47-53 (2006). PDF.
"In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond laser pulses"
W. Supatto, D. Débarre, B. Moulia, E. Brouzés, J.-L. Martin, E. Farge & E. Beaurepaire
PNAS 102(2), 1047-1052 (2005). PDF.
"Structure sensitivity in third-harmonic generation microscopy"
D. Débarre, W. Supatto & E. Beaurepaire
Opt. Lett. 30(16), 2134-2136 (2005). PDF.
"Femtosecond pulse-induced microprocessing of live Drosophila embryos"
W. Supatto, D. Débarre, E. Farge & E. Beaurepaire
Med. Laser Appl. 20(3), 207-216 (2005). PDF.
"Velocimetric third-harmonic generation microscopy: micrometer-scale quantificationof morphogenetic movements in unstained embryos"
D. Débarre, W. Supatto, E. Farge, B. Moulia, M.-C. Schanne-Klein & E. Beaurepaire
Opt. Lett. 29(24), 2881-2883 (2004). PDF.
"Second-harmonic microscopy of unstained living cardiac myocytes: measurements of sarcomere length with 20 nm accuracy"
T. Boulesteix, E. Beaurepaire, M.-P. Sauviat & M.-C. Schanne-Klein
Opt. Lett. 29(17), 2031-2034 (2004). PDF.
Research highlights
ChroMS – A revolution in brain imaging, YouTube / Ecole Polytechnique video (2019).
ChroMS – the brain as never seen before, Inserm press release (04/2019).
ChroMS, le cerveau comme il n’avait jamais été vu, CNRS press release (04/2019).
"Mesurer optiquement le diamètre des fibrilles de collagène", CNRS INP Actualités (11/2014).
"Une nouvelle approche pour l’imagerie multicolore rapide de tissus fluorescents", CNRS INP Actualités (07/2014).
"3D mapping of lipid orientation", E. Delcher, CNRS International Magazine 29, 11 (2013).
"Cartographier en 3D l'orientation des lipides...", CNRS Presse (01/2013).
"Multicolor two-photon tissue imaging...", F. Kiefer, F1000 article recommendation (09/2012).
"La microscopie biphotonique passe à la couleur", CNRS INP Actualités (07/2012).
"Microscope harmonies", D. Evanko, Nature Methods 7, 779 (2010).
"Developmental biology: Live-action embryos", Nature 466, 1025 (08/2010).
"Video: see fish grow", J. Akst, The Scientist (08/2010).
"Les premières minutes d'un embryon en vidéo", Pour la Science (09/2010).
"Les premières heures de la vie en 3D", Journal du CNRS 250, 8 (11/2010). PDF.
"Reconstruire automatiquement les phases précoces du développement de l'embryon du poisson zébré", CNRS INP Actualités (11/2010).
"Zoom: les cellules embryonnaires ondulent", La Recherche 445, 23 (2010).
"Quand ondulent les cellules embryonnaires", Sciences Actualités (08/2010).
"Giving a twist to Twist", Editor's choice, Science 322, 653 (2008).
"Cell biology: stretching the imagination", C. Ainsworth, Nature 456, 696 (2008).
"Great balls of fat", M. Beckman, Science 311, 1232 (2006).
"Making the kindest cut", M. Eisenstein, Nature Methods 2, 155 (2005). PDF.
"Lasers used to see if function follows form", H. Hogan, Biophotonics International 12(3), 51-2 (2005).
"Une nouvelle approche de la biomécanique du développement", INSERM actualités 189 (09/2005).